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><channel><title>Datavisualization.ch &#187; Biology</title> <atom:link href="http://datavisualization.ch/tag/biology/feed/" rel="self" type="application/rss+xml" /><link>http://datavisualization.ch</link> <description>Datavisualization.ch is the premier news and knowledge resource for data visualization and infographics.</description> <lastBuildDate>Wed, 01 Feb 2012 07:23:31 +0000</lastBuildDate> <language>en</language> <sy:updatePeriod>hourly</sy:updatePeriod> <sy:updateFrequency>1</sy:updateFrequency> <generator>http://wordpress.org/?v=3.3.1</generator> <item><title>Inspiration Impuls: Complexity Graphics</title><link>http://datavisualization.ch/showcases/complexity-graphics/</link> <comments>http://datavisualization.ch/showcases/complexity-graphics/#comments</comments> <pubDate>Fri, 01 Apr 2011 08:07:23 +0000</pubDate> <dc:creator>Benjamin Wiederkehr</dc:creator> <category><![CDATA[Showcases]]></category> <category><![CDATA[Art]]></category> <category><![CDATA[Biology]]></category> <category><![CDATA[Space]]></category><guid
isPermaLink="false">http://datavisualization.ch/?p=7425</guid> <description><![CDATA[Tatiana Plakhova is a Moscow based designer and the art director at Moscollective design studio. Her art is deeply inspired by complex patterns found in fractals or biological organisms.]]></description> <content:encoded><![CDATA[<a
href='http://datavisualization.ch/showcases/complexity-graphics/' title='Inspiration Impuls: Complexity Graphics' class='share_image'><img
src='http://datavisualization.ch/wp-content/uploads/2011/04/complexity_graphics_01.jpg' title='Inspiration Impuls: Complexity Graphics' alt='Inspiration Impuls: Complexity Graphics' /></a><p><a
href="http://www.complexitygraphics.com/">Tatiana Plakhova</a> is a Moscow based designer and the art director at Moscollective design studio. Her art is deeply inspired by complex patterns found in fractals or biological organisms. Instead of using algorithms to generate the images, she creates everything manually. This also indicates that, although a lot of her works look like visualizations, none of them are based on real data. <a
href="http://sublimotion.tumblr.com/tagged/Tatiana_Plakhova">Sublimotion</a> found the right words to describe the viewer&#8217;s experience:</p><blockquote><p>One instinctively feels that the complexity of her lines and dots does not lead to a dead end, but to an inner universe aligning with our consciousness. She combines the aesthetic experience of viewing art with that of observing nature. Her work embodies how balance and harmony can emerge from chaos; it plays with our natural curiosity to explore visual stimuli.</p></blockquote><p><img
class="alignnone size-full wp-image-7487" title="BioCircles" src="http://datavisualization.ch/wp-content/uploads/2011/04/BioCircles_Small_640.jpg" alt="" width="640" height="437" /><img
class="alignnone size-full wp-image-7488" title="BioCircles Zoom" src="http://datavisualization.ch/wp-content/uploads/2011/04/BioCircles_Zoom_640.jpg" alt="" width="640" height="431" /><img
class="alignnone size-full wp-image-7489" title="BioCircles Segment" src="http://datavisualization.ch/wp-content/uploads/2011/04/BioSegment.jpg" alt="" width="640" height="469" /><img
class="alignnone size-full wp-image-7495" title="Links" src="http://datavisualization.ch/wp-content/uploads/2011/04/s25june_9_5_640.jpg" alt="" width="640" height="945" /><img
class="alignnone size-full wp-image-7494" title="NorthenCircle" src="http://datavisualization.ch/wp-content/uploads/2011/04/NorthenCircle7_640.jpg" alt="" width="640" height="640" /><img
class="alignnone size-full wp-image-7491" title="NorthenCircle Zoom" src="http://datavisualization.ch/wp-content/uploads/2011/04/HS53w_640.jpg" alt="" width="640" height="403" /><img
class="alignnone size-full wp-image-7486" title="NorthenCircle" src="http://datavisualization.ch/wp-content/uploads/2011/04/6ab0ada069eaf9d6f59954c8dc7b1cf8_640.jpg" alt="" width="640" height="632" /><img
class="alignnone size-full wp-image-7493" title="NorthenCircle Full" src="http://datavisualization.ch/wp-content/uploads/2011/04/musical3_4_640.jpg" alt="" width="640" height="635" /><img
class="alignnone size-full wp-image-7492" title="Jelly" src="http://datavisualization.ch/wp-content/uploads/2011/04/Jellyfishes_Small_640.jpg" alt="" width="640" height="517" /><img
class="alignnone size-full wp-image-7490" title="complexity1000" src="http://datavisualization.ch/wp-content/uploads/2011/04/complexity1000_640.jpg" alt="" width="640" height="905" /></p><p>Editor&#8217;s note: With the Inspiration Impuls articles we exhibit mouth-watering visuals from disciplines like art, science or architecture to get your creative juices flowing. If you have any suggestions, please let us know!</p> <img
src='http://datavisualization.ch/wp-content/uploads/2011/04/complexity_graphics_source.jpg' title='Submitter of Inspiration Impuls: Complexity Graphics' alt='Submitter of Inspiration Impuls: Complexity Graphics' />Find more of Tatiana's art on her website <a
href="http://www.complexitygraphics.com/">ComplexityGraphics.com</a>, her <a
href="http://www.behance.net/TatianaPlakhova">portfolio on Behance</a> or her <a
href="http://www.flickr.com/photos/plakhova/">Flickr photostream</a>.]]></content:encoded> <wfw:commentRss>http://datavisualization.ch/showcases/complexity-graphics/feed/</wfw:commentRss> <slash:comments>0</slash:comments> </item> <item><title>Simplicity and Education – A Use Case</title><link>http://datavisualization.ch/showcases/simplicity-and-education/</link> <comments>http://datavisualization.ch/showcases/simplicity-and-education/#comments</comments> <pubDate>Sat, 31 Oct 2009 09:16:36 +0000</pubDate> <dc:creator>Benjamin Wiederkehr</dc:creator> <category><![CDATA[Showcases]]></category> <category><![CDATA[Biology]]></category> <category><![CDATA[Education]]></category> <category><![CDATA[Flash]]></category><guid
isPermaLink="false">http://datavisualization.ch/?p=3895</guid> <description><![CDATA[How can we communicate facts that are abstract or out of our field of vision? Illustrating it is an excellent and often used technic to do so. But how can we go about facts that are impossible to bring on one piece of paper? The University Of Utah has a possible solution.]]></description> <content:encoded><![CDATA[<p>How can we communicate facts that are abstract or out of our field of vision? Illustrating it is an excellent and often used technic to do so. But how can we go about facts that are impossible to bring on one piece of paper? The University Of Utah has a possible solution.</p><p><img
class="alignnone size-full wp-image-3898" title="cellsize_and_scale_01" src="http://www.datavisualization.ch/wp-content/uploads/2009/10/cellsize_and_scale_01.jpg" alt="cellsize_and_scale_01" width="710" height="392" /></p><p>Cell Size And Scale is a small Flash application that shows object of different sizes. Ranging from a coffeee bean to the carbon atom. The only interaction needed and the only interaction available is scaling. Seems obvious, right? What I really appreciate about it is the fact that the horizontal scroll bar is the only interactive object. No zooming by double-click, no drag &amp; drop, no right-click. Simply move the bar from left to right as you scale through the dimensions.</p><p>Simplycity meets illustration meets education – hopefully the result is insight with a touch of joy.</p><p><span
class="read_on source"><a
href="http://learn.genetics.utah.edu/content/begin/cells/scale/">Cell Size and Scale</a> on Utah.edu</span></p> ]]></content:encoded> <wfw:commentRss>http://datavisualization.ch/showcases/simplicity-and-education/feed/</wfw:commentRss> <slash:comments>2</slash:comments> </item> <item><title>Scientific Visualizations on TED</title><link>http://datavisualization.ch/showcases/scientific-visualizations-on-ted/</link> <comments>http://datavisualization.ch/showcases/scientific-visualizations-on-ted/#comments</comments> <pubDate>Tue, 20 Oct 2009 23:11:04 +0000</pubDate> <dc:creator>Benjamin Wiederkehr</dc:creator> <category><![CDATA[Showcases]]></category> <category><![CDATA[Biology]]></category> <category><![CDATA[Science]]></category><guid
isPermaLink="false">http://datavisualization.ch/?p=3815</guid> <description><![CDATA[Henry Markam took the TED audience on a journey into the human brain in his talk at TED 2009. Although the majority of the audience had a solid academic background his fantastic scientific visualizations helped illustrate the complex concepts he tried to communicate.]]></description> <content:encoded><![CDATA[<p><strong>Henry Markam</strong> took the TED audience on a journey into the human brain in <a
href="http://www.ted.com/talks/henry_markram_supercomputing_the_brain_s_secrets.html" title="Henry Markram builds a brain in a supercomputer">his talk at TED 2009</a>. Although the majority of the audience had a solid academic background his fantastic scientific visualizations helped illustrate the complex concepts he tried to communicate.</p><p>As Peter Gassner discussed in <a
href="http://www.datavisualization.ch/articles/data-visualization-is-a-tool-too" title="Data visualization is a tool, too!">his article</a> earlier this year such visualizations have a different goal in communicating data. Although it is not possible to understand the information at first sight, the visualizations help to communicate basic processes and basic concepts. The duty of extracting meaning from such an image as up to the experts familiar with the material.</p><p><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_02.png" alt="scientific_visualization_02" title="scientific_visualization_02" width="710" height="300" class="alignnone size-full wp-image-3813" /><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_01.png" alt="scientific_visualization_01" title="scientific_visualization_01" width="710" height="300" class="alignnone size-full wp-image-3813" /><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_03.png" alt="scientific_visualization_03" title="scientific_visualization_03" width="710" height="300" class="alignnone size-full wp-image-3813" /><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_04.png" alt="scientific_visualization_04" title="scientific_visualization_04" width="710" height="300" class="alignnone size-full wp-image-3813" /><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_05.png" alt="scientific_visualization_05" title="scientific_visualization_05" width="710" height="300" class="alignnone size-full wp-image-3813" /><img
src="http://www.datavisualization.ch/wp-content/uploads/2009/10/scientific_visualization_06.png" alt="scientific_visualization_06" title="scientific_visualization_06" width="710" height="300" class="alignnone size-full wp-image-3813" /></p><p>The video is definitely a great inspiration and even there are things I haven&#8217;t completely wrapped my head around it helps communicate the work of Markam and his team in a much better understandable way.</p><p><object
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isPermaLink="false">http://datavisualization.ch/?p=3465</guid> <description><![CDATA[Ben Fry has made the first step of his new project available to the public: A visualization of the developement of Charles Darwin's book "On the Origin of Species".]]></description> <content:encoded><![CDATA[<p>Ben Fry has made the first step of <a
title="On the Origin of Species: The Preservation of Darwin's Favored Traces" href="http://benfry.com/traces/">his new project</a> available to the public: A visualization of the developement of Charles Darwin&#8217;s book &#8220;On the Origin of Species&#8221;.</p><p>The content of the book is displayed line by line and grouped into the chapters. The revisions are shown as an animation where the changed pieces of content are color-coded per version. Hovering over the lines opens a tooltip displaying the actual text of the <a
title="On the Origin of Species on Wikipedia" href="http://en.wikipedia.org/wiki/On_the_Origin_of_Species">book</a>.</p><p><img
class="alignnone size-full wp-image-3467" title="fry_darwin_01" src="http://www.datavisualization.ch/wp-content/uploads/2009/09/fry_darwin_01.png" alt="fry_darwin_01" width="710" height="475" /><img
class="alignnone size-full wp-image-3468" title="fry_darwin_02" src="http://www.datavisualization.ch/wp-content/uploads/2009/09/fry_darwin_02.png" alt="fry_darwin_02" width="710" height="475" /></p><p>The visualization combines some best-practices of interactive information visualization. Animation gives an effortless overview over the revisions and draws the view in. Detials on demand give further context to an abstract representation of information.</p><p>This piece is a simpler version of a larger effort that looks at the changes between editions, and is intended as the first in a series looking at how the book evolved over time. The visualization is created using <a
title="Processing.org" href="http://www.processing.org">Processing</a> and the data is provided by Dr. John van Wyhe, et al. who run <a
href="http://darwin-online.org.uk/">The Complete Work of Charles Darwin Online</a>.</p><p><span
class="read_on source">Via <a
href="http://infosthetics.com/archives/2009/09/on_the_origin_of_species_the_preservation_of_favored_traces.html">Infosthetics</a> / <a
href="http://www.benfry.com/">Ben Fry</a></span></p> ]]></content:encoded> <wfw:commentRss>http://datavisualization.ch/showcases/revisions-of-on-the-origin-of-species/feed/</wfw:commentRss> <slash:comments>0</slash:comments> </item> <item><title>Working with Processing &amp; Google Spreadsheets</title><link>http://datavisualization.ch/tools/working-with-processing-and-google-spreadsheets/</link> <comments>http://datavisualization.ch/tools/working-with-processing-and-google-spreadsheets/#comments</comments> <pubDate>Wed, 08 Jul 2009 07:54:58 +0000</pubDate> <dc:creator>Benjamin Wiederkehr</dc:creator> <category><![CDATA[Showcases]]></category> <category><![CDATA[Tools]]></category> <category><![CDATA[API]]></category> <category><![CDATA[Biology]]></category> <category><![CDATA[Genomics]]></category> <category><![CDATA[Google]]></category> <category><![CDATA[Processing]]></category><guid
isPermaLink="false">http://datavisualization.ch/?p=2582</guid> <description><![CDATA[Jer Thorp from blrprnt.com has published some screenshots from one of his newest projects "Flu Genomics". While there isn't much information available yet about the tool itself, Jer has put together an excellent explanation about the working process he used for this project.]]></description> <content:encoded><![CDATA[<p><a
href="http://blog.blprnt.com/about">Jer Thorp</a> from <a
href="http://www.blprnt.com/">blrprnt.com</a> has published <a
title="Flu Genomics on Flickr.com" href="http://www.flickr.com/photos/blprnt/sets/72157620913750859/">some screenshots</a> and a brief description from one of his newest projects &#8220;Flu Genomics&#8221;. While there isn&#8217;t much information available yet about the tool itself, Jer has put together <a
title="Open Science, H1N1, Processing, and the Google Spreadsheet API" href="http://blog.blprnt.com/?s=Google+Spreadsheets">an excellent explanation</a> about the working process he used for this project.</p><p><img
class="alignnone size-full wp-image-2581" title="processing_spredsheets_01" src="http://www.datavisualization.ch/wp-content/uploads/2009/07/processing_spredsheets_01.png" alt="processing_spredsheets_01" width="710" height="399" /></p><p>The building blocks of the developement are <a
href="http://www.processing.org/">Processing</a> as the scripting language and <a
href="http://spreadsheets.google.com/">Google Spreadsheets</a> as the database. I&#8217;m currently also working with Google Spreadsheets so I was pleased to see that others share my thoughts about it&#8217;s advantages:</p><ul><li>Handles large datasets with ease</li><li>The dataset is syncronized immediately, thus no need for keeping multiple files updated</li><li>The dataset is editable simultaneously</li><li>Provides the client with a familiar interface to edit the data</li><li>No need for keeping multiple files updated</li><li>Well documented <a
title="Google Spreadsheets APIs and Tools" href="http://code.google.com/intl/de-DE/apis/spreadsheets/overview.html">API</a></li></ul><p>I highly recommend to read the full article as it provides detailled information about accessing Spreadsheets using Processing. Jer also shares the source code as he already did for the <a
title="Processing, JSON &amp; The New York Times" href="http://blog.blprnt.com/blog/blprnt/processing-json-the-new-york-times">NYTimes API</a> or the <a
title="The Guardian Open Platform" href="http://blog.blprnt.com/blog/blprnt/the-guardian-open">Guardian Open Platform</a>.</p> ]]></content:encoded> <wfw:commentRss>http://datavisualization.ch/tools/working-with-processing-and-google-spreadsheets/feed/</wfw:commentRss> <slash:comments>0</slash:comments> </item> <item><title>&#8220;Gitter&#8221; is visualizing GitHub with code_swarm</title><link>http://datavisualization.ch/showcases/gitter-visualization-with-code_swarm/</link> <comments>http://datavisualization.ch/showcases/gitter-visualization-with-code_swarm/#comments</comments> <pubDate>Wed, 28 Jan 2009 19:36:57 +0000</pubDate> <dc:creator>Benjamin Wiederkehr</dc:creator> <category><![CDATA[Showcases]]></category> <category><![CDATA[Application]]></category> <category><![CDATA[Biology]]></category> <category><![CDATA[Processing]]></category> <category><![CDATA[Video]]></category><guid
isPermaLink="false">http://datavisualization.ch/?p=727</guid> <description><![CDATA[Ilya Grigorik from igvita.com has created a visualization of the usage of GitHub. He used code_swarm to show the organic growth of a software developement process.]]></description> <content:encoded><![CDATA[<p><a
href="http://www.igvita.com/about/">Ilya Grigorik</a> from <a
href="http://www.igvita.com/">igvita.com</a> has created a visualization of the usage of GitHub. He used <a
href="http://vis.cs.ucdavis.edu/~ogawa/codeswarm/">code_swarm</a> to show the organic growth of a software developement process.</p><p><object
width="709" height="399" data="http://vimeo.com/moogaloop.swf?clip_id=2979892&amp;server=vimeo.com&amp;show_title=1&amp;show_byline=1&amp;show_portrait=0&amp;color=00ADEF&amp;fullscreen=1" type="application/x-shockwave-flash"><param
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title="Interaction &amp; Game Design" href="http://iad.zhdk.ch">IAD</a> program, we&#8217;ve digged deep in this field and came up with a variety of possible solutions. You can find the documentation of my own project at <a
title="Software visualization project" href="http://portfolio.artillery.ch/zhdk/softwarevisualization-2">artillery.ch</a>.</li><li>The <strong>analyzed data</strong> comes from <a
title="GitHub – social code hosting" href="http://github.com">GitHub</a>, a superb code hosting platform that has rised to stardom in the community lately. For the visualization Ilya used the GitHub API to look up all the public repositories and to create a timeline of all the made commits to the repos.</li><li>Let&#8217;s take a short look at <strong>code_swarm</strong>: The best description of code_swarm is &#8216;organic software visualization&#8217;.<br
/><blockquote><p>It eschews traditional data confinement in space and lets the elements play together in freeform and unpredictable ways.</p></blockquote></li></ul><p>The code_swarm code is open-source and available at <a
href="http://code.google.com/p/codeswarm/">Google Code</a> and the official project website is at <a
title="Website of code_swarm" href="http://vis.cs.ucdavis.edu/~ogawa/codeswarm/">vis.cs.ucdavis.edu/~ogawa/codeswarm</a> sporting some videos of well known software projects (Apache, Eclipse, Python).</p><p><object
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